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Biological Software Tools

As the field of biology explodes, so have the number of modeling programs.  Here are a few.

 Accelrys     Scientific software for bioinformaticians, molecular biologists, protein modelers, structural and screening biologists and computational chemists.
 Illumina Tools for the large-scale analysis of genetic variation and function
 Paralign Rapid and sensitive sequence similarity searches
 MolecBioTools

Analysis of nucleotide and protein sequence data

 Bio Tools Bioinformatics, Genomics, Proteomics, Biotechnology and Molecular Biology Directory